Healthy Greek Yogurt Pumpkin Muffins – Moist, Fluffy & Naturally Sweetened

If you love pumpkin spice season but want a lighter treat you can enjoy guilt-free, these Healthy Greek Yogurt Pumpkin Muffins are the answer! Packed with real pumpkin puree, protein-rich Greek yogurt, and warm fall spices, they’re moist, fluffy, and bursting with flavor—without tons of sugar or oil. Perfect for breakfast, snacks, or meal prep, these muffins are the cozy, healthy indulgence you’ll want all autumn long.

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Why You’ll Love These Muffins

  • High in protein thanks to Greek yogurt
  • Moist without excess oil
  • Naturally sweetened with honey or maple syrup
  • Perfect for meal prep—freeze well and reheat beautifully
  • Warm fall flavors in every bite

Ingredients You’ll Need

  • 1 cup pumpkin puree (not pumpkin pie filling)
  • ½ cup plain Greek yogurt (nonfat or full-fat)
  • 2 large eggs
  • ⅓ cup honey or pure maple syrup
  • 1 tsp vanilla extract
  • 1 cup whole wheat flour (or all-purpose flour)
  • ½ tsp baking soda
  • 1 tsp baking powder
  • 1 ½ tsp pumpkin pie spice
  • ¼ tsp salt

Optional: Mini chocolate chips, chopped nuts, or pepitas for topping

Step-by-Step Instructions

  1. Preheat oven to 350°F (175°C) and line a muffin tin with paper liners.
  2. In a mixing bowl, whisk together pumpkin puree, Greek yogurt, eggs, honey, and vanilla until smooth.
  3. In another bowl, combine flour, baking soda, baking powder, pumpkin spice, and salt.
  4. Gently fold the dry ingredients into the wet mixture until just combined—do not overmix.
  5. Divide batter evenly among muffin cups, filling about ¾ full.
  6. Bake for 18–20 minutes, or until a toothpick comes out clean.
  7. Cool slightly before enjoying warm, or store in an airtight container.

Tips for the Best Muffins

  • For extra moisture, use full-fat Greek yogurt.
  • Sprinkle pepitas or oats on top for a bakery-style look.
  • Add ½ cup mini chocolate chips for a sweeter treat.

Storage & Freezing

  • Store at room temperature for up to 3 days or refrigerate for up to 5 days.
  • Freeze for up to 3 months—reheat in the microwave for 20–30 seconds before serving.

These Healthy Greek Yogurt Pumpkin Muffins are proof that fall baking can be both delicious and nourishing. Pair with a latte on a crisp morning, pack for school lunches, or keep in the freezer for a quick snack—you’ll find endless ways to enjoy them! 🍂

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